Follow these steps to ensure QuickBooks is properly setup:

1. Go to MANAGE MY BUSINESS
2. Go to MANAGE MY PAYROLL, SHIFTS AND LABOR RULES
3. Pick QUICKBOOKS in the drop down
4. Make sure to import your payroll items first (see steps here)
5. Match the appropriate payroll type to your QuickBooks payroll item
6. If needed, you can override at a per employee level by going to their profile: